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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10143112_10144156_R

Intron Information:

Intron Rank:
130800
Intron Class:
major
Intron Phase:
Intron Coordinates:
10143112 - 10144156
Intron Length:
1045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCACTAAA
5'SS Class:
major
3'SS Sequence:
TATTTTTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TATTTTTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.4
74.1
38.3
Major BPS
70.2
0.5
1
72.1
33
Major PPT
85.5
0.8
0.8
86
32.8
Minor 5ss
36
-1.6
2.6
42.8
44
Minor BPS
66.8
0.53
1.5
75.77
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017612
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031802
10142542 - 10161646
19105