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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101502732_101505187_R

Intron Information:

Intron Rank:
142902
Intron Class:
major
Intron Phase:
Intron Coordinates:
101502732 - 101505187
Intron Length:
2456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TATCAATCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTCTATCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
71.1
0.48
0.9
67.5
38.6
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
48.7
-0.1
1.8
62.07
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024202
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043243
101502416 - 101505318
2903