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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101550752_101552286_F

Intron Information:

Intron Rank:
131233
Intron Class:
major
Intron Phase:
Intron Coordinates:
101550752 - 101552286
Intron Length:
1535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAATG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
43.2
-0.7
2.9
57.1
47.2
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020492
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044123
101545803 - 101552340
6538