Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101581653_101590005_F

Intron Information:

Intron Rank:

150198

Intron Class:

major

Intron Phase:

Intron Coordinates:

101581653 - 101590005

Intron Length:

8353

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTGTA

5'SS Class:

strong_major

3'SS Sequence:

GTGTGCCTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GAATCAC

U12 Branch Point Sequence:

CTGTGTGGAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.2

28.6

Major BPS

52.8

0.07

1.2

57.7

Major PPT

74.7

0.56

41.4

Minor 5ss

42.4

-0.8

3.1

57.6

47.1

Minor BPS

40.2

-0.7

2.3

49.87

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030730

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048542

101581544 - 101596624

15081

ENSAPLT00000044791

101581544 - 101596624

15081