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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101590198_101596106_F

Intron Information:

Intron Rank:
150197
Intron Class:
major
Intron Phase:
Intron Coordinates:
101590198 - 101596106
Intron Length:
5909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
GTCTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
CAAAGCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.2
65.7
40.2
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
86.2
0.82
0.8
84.1
30.9
Minor 5ss
37.5
-1.4
3.1
54.6
42.8
Minor BPS
40.6
-0.6
2
51.59
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030730
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048542
101581544 - 101596624
15081
ENSAPLT00000044791
101581544 - 101596624
15081
ENSAPLT00000037172
101589754 - 101596624
6871