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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101719471_101722334_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
101719471 - 101722334
Intron Length:
2864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGATA
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGATAATGATTT
Flanking Amino Acid:
DRGPEAIMDTSSDNAPAPPA
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
75.2
36.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
92.8
0.96
0.6
88.9
20.3
Minor 5ss
30.9
-2.2
3.2
40.3
45.6
Minor BPS
42.9
-0.4
2
61.32
41.8

Associated Gene:

Gene:
USP25
Ensembl Gene ID:
ENSAPLG00000014057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039279
101682408 - 101737646
55239
ENSAPLT00000024187
101682408 - 101737646
55239