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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101722449_101724338_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
101722449 - 101724338
Intron Length:
1890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACATTTG
5'SS Class:
major
3'SS Sequence:
TCCCTTATGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTACCTTAAAT
Flanking Amino Acid:
ESEEGGYDDEVMLTPNMQGI
Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
72.3
40
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
72
0.5
1
69
35.7
Minor 5ss
42.1
-0.9
3.2
57.9
46.7
Minor BPS
81.8
1.08
1.3
94.62
31.7

Associated Gene:

Gene:
USP25
Ensembl Gene ID:
ENSAPLG00000014057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024187
101682408 - 101737646
55239