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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101727965_101728796_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
101727965 - 101728796
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAGA
5'SS Class:
strong_major
3'SS Sequence:
TGCTATTCATAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TCTTTTGTGATT
Flanking Amino Acid:
FGDHNLSFDERCRNIMKVAQ
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73.6
37
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
60.5
0.24
1.1
65.3
40
Minor 5ss
32.9
-1.9
2.9
41.2
44.6
Minor BPS
50.9
0.11
2
73.17
39

Associated Gene:

Gene:
USP25
Ensembl Gene ID:
ENSAPLG00000014057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039279
101682408 - 101737646
55239
ENSAPLT00000024187
101682408 - 101737646
55239
ENSAPLT00000014755
101682408 - 101737209
54802
ENSAPLT00000047435
101682408 - 101737646
55239