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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101730860_101735541_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
101730860 - 101735541
Intron Length:
4682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TACTTTGCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GTTTCTTTACTT
Flanking Amino Acid:
MVGLEFFQKKSYMEALLYLI
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
75.5
0.57
0.9
73.8
36.5
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
70
0.71
1.6
84.22
37.1

Associated Gene:

Gene:
USP25
Ensembl Gene ID:
ENSAPLG00000014057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024187
101682408 - 101737646
55239
ENSAPLT00000014755
101682408 - 101737209
54802
ENSAPLT00000047435
101682408 - 101737646
55239
ENSAPLT00000039279
101682408 - 101737646
55239