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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101735666_101736338_F

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
101735666 - 101736338
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
GTGGTACGTGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TATACTTAAAGG
Flanking Amino Acid:
ISHYRRECLLKLNEHAAALF
Intron Amino Acid Position:
855

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.1
31.1
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
51
0.02
1.2
49.7
43.3
Minor 5ss
33.9
-1.8
3.2
41.6
40.4
Minor BPS
48.1
-0.2
2
56.82
44.7

Associated Gene:

Gene:
USP25
Ensembl Gene ID:
ENSAPLG00000014057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024187
101682408 - 101737646
55239
ENSAPLT00000014755
101682408 - 101737209
54802
ENSAPLT00000047435
101682408 - 101737646
55239
ENSAPLT00000039279
101682408 - 101737646
55239