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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101736535_101737036_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
101736535 - 101737036
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTCGTATTT
Flanking Amino Acid:
WCSYLGQEMEPNLQEKLTDF
Intron Amino Acid Position:
920

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
87
30
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.4
0.98
0.7
89.1
26.3
Minor 5ss
38.8
-1.3
2.8
50.6
39.2
Minor BPS
56
0.27
2.2
82.89
39.2

Associated Gene:

Gene:
USP25
Ensembl Gene ID:
ENSAPLG00000014057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039279
101682408 - 101737646
55239
ENSAPLT00000024187
101682408 - 101737646
55239
ENSAPLT00000014755
101682408 - 101737209
54802
ENSAPLT00000047435
101682408 - 101737646
55239