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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101879805_101886321_F

Intron Information:

Intron Rank:
126476
Intron Class:
major
Intron Phase:
Intron Coordinates:
101879805 - 101886321
Intron Length:
6517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GCTTTTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.6
0.76
0.7
76.7
31.9
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
61.1
0.43
1.7
76.65
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018158
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044716
101879677 - 101958938
79262