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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1019736_1020470_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1019736 - 1020470
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
CTATCCTGACCT
Flanking Amino Acid:
KKLVTQREKEINVEEAKEIW
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.9
25.6
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
83.6
0.76
0.8
77.3
36.7
Minor 5ss
37
-1.5
2.6
46.5
41.8
Minor BPS
60.6
0.41
1.8
77.76
44.2

Associated Gene:

Gene:
FBH1
Ensembl Gene ID:
ENSAPLG00000009754
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010201
1009974 - 1030196
20223