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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1020559_1021152_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1020559 - 1021152
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TTCTCAGTGACG
Flanking Amino Acid:
VEKKYKITCDGYLKLWQLSK
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
67.8
37.5
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
88.8
0.87
0.6
88.2
21.6
Minor 5ss
29.9
-2.3
3.3
35.1
42.4
Minor BPS
48.4
-0.2
2.4
63.65
44.4

Associated Gene:

Gene:
FBH1
Ensembl Gene ID:
ENSAPLG00000009754
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010201
1009974 - 1030196
20223