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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102252836_102295482_R

Intron Information:

Intron Rank:
130835
Intron Class:
major
Intron Phase:
Intron Coordinates:
102252836 - 102295482
Intron Length:
42647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCGT
5'SS Class:
major
3'SS Sequence:
TTTTTTGGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
CTCTATTTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
66
45.4
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
74.6
0.55
0.9
69.4
41.7
Minor 5ss
38.9
-1.2
3.2
56.8
47.4
Minor BPS
48.7
-0.1
1.8
58.1
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017632
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023406
102252633 - 102309067
56435