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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102295570_102302639_R

Intron Information:

Intron Rank:
130838
Intron Class:
major
Intron Phase:
Intron Coordinates:
102295570 - 102302639
Intron Length:
7070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
100
1.24
0.5
100
0
Major PPT
87
0.83
0.7
81.3
29.6
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
55.4
0.16
2.1
77.45
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017632
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026228
102295133 - 102309067
13935
ENSAPLT00000023993
102282021 - 102303251
21231