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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102382372_102391265_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102382372 - 102391265
Intron Length:
8894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
GTATTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGATTTTTAAAA
Flanking Amino Acid:
MGLTRSLSITP
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
77.9
38.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.4
0.71
0.8
76.7
37.3
Minor 5ss
34.6
-1.7
2.7
34.2
41.4
Minor BPS
65.2
0.47
1.3
69.89
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030561
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028158
102382368 - 102409525
27158