About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102391436_102392601_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102391436 - 102392601
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TATTCTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GATTTCTGAATC
Flanking Amino Acid:
PTDNQKKEQIIIMYAVDRIY
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.5
37.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.1
0.79
0.7
80.6
31.1
Minor 5ss
37
-1.5
2.7
44
38.5
Minor BPS
64.3
0.43
1.4
69.11
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030561
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045022
102375724 - 102409525
33802
ENSAPLT00000039752
102375724 - 102427550
51827
ENSAPLT00000028158
102382368 - 102409525
27158