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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102392807_102393156_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102392807 - 102393156
Intron Length:
350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATTCAATAATA
Flanking Amino Acid:
QSQKIQLTVLVKPARTKCSI
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.9
35.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.8
0.63
0.9
78.3
34.5
Minor 5ss
38.8
-1.3
2.9
45.4
43.9
Minor BPS
55.7
0.18
1.8
69.74
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030561
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045022
102375724 - 102409525
33802
ENSAPLT00000039752
102375724 - 102427550
51827
ENSAPLT00000028158
102382368 - 102409525
27158