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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102393313_102395366_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
102393313 - 102395366
Intron Length:
2054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTACTGTCA
5'SS Class:
weak_major
3'SS Sequence:
TTGTTCCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAC
U12 Branch Point Sequence:
CTTTGGTAAATG
Flanking Amino Acid:
TQELPATSTLNRNTGELLLK
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.2
0.01
1.1
46.9
38
Major BPS
53.3
0.08
1.1
61.3
34.4
Major PPT
82.4
0.73
0.8
78
30.8
Minor 5ss
37.3
-1.4
3.4
43.6
44.8
Minor BPS
42.4
-0.7
2.6
54.08
47.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030561
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039752
102375724 - 102427550
51827
ENSAPLT00000028158
102382368 - 102409525
27158
ENSAPLT00000045022
102375724 - 102409525
33802