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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102395963_102396286_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102395963 - 102396286
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
KYEKEVHHDIREDVPPPKSR
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
74.2
35.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
90.4
0.91
0.7
89.1
26
Minor 5ss
32.6
-2
3.1
41.2
44.8
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030561
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045022
102375724 - 102409525
33802
ENSAPLT00000039752
102375724 - 102427550
51827
ENSAPLT00000028158
102382368 - 102409525
27158