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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102396474_102427334_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102396474 - 102427334
Intron Length:
30861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTGCA
5'SS Class:
major
3'SS Sequence:
TATTTTACTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTTATCT
Flanking Amino Acid:
GQNQTFASSKVSYCSWQRHQ
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.2
66
40.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
80.8
0.69
0.8
79.3
33.6
Minor 5ss
37.1
-1.5
3.4
50.2
46.2
Minor BPS
73.7
0.82
1.7
93.25
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030561
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039752
102375724 - 102427550
51827