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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102444475_102444946_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102444475 - 102444946
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
GATGTTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
AGTGCATTAACC
Flanking Amino Acid:
LNEKLLKQIQDVFEELTQQV
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
80.6
33.8
Major BPS
76.8
0.67
1
66
40.9
Major PPT
77
0.61
0.9
69.8
41.2
Minor 5ss
33.5
-1.9
3.1
41.3
44.8
Minor BPS
62.6
0.38
1.7
71.09
39.6

Associated Gene:

Gene:
C21orf91
Ensembl Gene ID:
ENSAPLG00000007838
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008145
102443446 - 102460068
16623