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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102445010_102448229_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102445010 - 102448229
Intron Length:
3220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTCTTACAG
Flanking Amino Acid:
HRHPHYSREELNTMTPGELK
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.7
0.89
0.7
84.3
30.6
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
57.3
0.09
1.8
65.06
42.6

Associated Gene:

Gene:
C21orf91
Ensembl Gene ID:
ENSAPLG00000007838
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008145
102443446 - 102460068
16623