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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102448767_102459937_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102448767 - 102459937
Intron Length:
11171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
ATTGTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
CHVCFELNIEGVPKSDLLHT
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.5
0.75
0.8
76.8
36.8
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
C21orf91
Ensembl Gene ID:
ENSAPLG00000007838
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008145
102443446 - 102460068
16623