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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102528311_102569096_F

Intron Information:

Intron Rank:
141039
Intron Class:
major
Intron Phase:
Intron Coordinates:
102528311 - 102569096
Intron Length:
40786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
GTGGATCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
GATCACACAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.4
1.09
0.7
87
30
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
71.1
0.48
1
66.1
45
Minor 5ss
35.1
-1.7
2.7
41.5
45.1
Minor BPS
44.7
-0.3
1.9
62.62
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044362
102528109 - 102571921
43813