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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102569209_102570295_F

Intron Information:

Intron Rank:
141040
Intron Class:
major
Intron Phase:
Intron Coordinates:
102569209 - 102570295
Intron Length:
1087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
AAATATTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATTCACTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
76.9
33.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
73.6
0.53
1
66.4
43.8
Minor 5ss
35.1
-1.7
2.8
38.8
40.3
Minor BPS
53.2
0.18
1.8
75.41
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044362
102528109 - 102571921
43813