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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102570430_102571469_F

Intron Information:

Intron Rank:
141041
Intron Class:
major
Intron Phase:
Intron Coordinates:
102570430 - 102571469
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
ACTTATTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
ATGTTTTTGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.8
87.8
27.9
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
76.8
0.6
0.8
74.3
35.5
Minor 5ss
35.8
-1.6
3.3
48.1
47.6
Minor BPS
67.3
0.53
1.2
70.75
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044362
102528109 - 102571921
43813