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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10260460_10261580_F

Intron Information:

Intron Rank:
127760
Intron Class:
major
Intron Phase:
Intron Coordinates:
10260460 - 10261580
Intron Length:
1121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTATGTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.9
34.9
Major BPS
100
1.24
0.5
100
0
Major PPT
91.3
0.93
0.5
92.5
17.5
Minor 5ss
36.3
-1.5
2.9
47
41.7
Minor BPS
56.9
0.3
2.2
81.61
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018878
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047426
10260135 - 10264428
4294
ENSAPLT00000045960
10260135 - 10264428
4294