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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102611414_102625833_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102611414 - 102625833
Intron Length:
14420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
ACTCACCCACCT
Flanking Amino Acid:
TGALAGRVLSGQKVCYGDFK
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.6
38.9
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
100
1.12
0.4
100
0
Minor 5ss
31.1
-2.2
2.7
37.6
40
Minor BPS
40
-0.6
2.1
58.2
44

Associated Gene:

Gene:
CHODL
Ensembl Gene ID:
ENSAPLG00000007788
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031800
102610658 - 102684329
73672
ENSAPLT00000039525
102610658 - 102636208
25551
ENSAPLT00000029766
102610658 - 102647370
36713
ENSAPLT00000032865
102610658 - 102641514
30857
ENSAPLT00000025771
102610658 - 102650484
39827
ENSAPLT00000032720
102610658 - 102637907
27250
ENSAPLT00000008085
102610658 - 102635899
25242
ENSAPLT00000032671
102610658 - 102684329
73672