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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10261653_10262253_F

Intron Information:

Intron Rank:
127762
Intron Class:
major
Intron Phase:
Intron Coordinates:
10261653 - 10262253
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTAAATTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATATCATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
79.4
0.73
1
80.1
32
Major PPT
79.4
0.66
0.9
72.7
41.7
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
67
0.61
1.7
82.57
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018878
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047426
10260135 - 10264428
4294