About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102626147_102626823_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102626147 - 102626823
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTACTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AATTTTTTATTT
Flanking Amino Acid:
QWADGSVSPFRNWYTDEPSC
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
62.8
0.29
1.1
55.6
44.8
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
60.9
0.42
1.5
74.66
36.6

Associated Gene:

Gene:
CHODL
Ensembl Gene ID:
ENSAPLG00000007788
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029766
102610658 - 102647370
36713
ENSAPLT00000032865
102610658 - 102641514
30857
ENSAPLT00000025771
102610658 - 102650484
39827
ENSAPLT00000032720
102610658 - 102637907
27250
ENSAPLT00000008085
102610658 - 102635899
25242
ENSAPLT00000032671
102610658 - 102684329
73672
ENSAPLT00000031800
102610658 - 102684329
73672
ENSAPLT00000039525
102610658 - 102636208
25551