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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102626982_102630229_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102626982 - 102630229
Intron Length:
3248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ATTGATTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
AACTCTTTAACT
Flanking Amino Acid:
KHNFICKYGLDNVLEKELGD
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.8
34.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
72
0.49
1
66.4
43.3
Minor 5ss
31.6
-2.1
3.4
42.4
45.1
Minor BPS
78.3
0.97
1.1
83.43
37.5

Associated Gene:

Gene:
CHODL
Ensembl Gene ID:
ENSAPLG00000007788
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025771
102610658 - 102650484
39827
ENSAPLT00000032865
102610658 - 102641514
30857
ENSAPLT00000008085
102610658 - 102635899
25242
ENSAPLT00000032720
102610658 - 102637907
27250
ENSAPLT00000031800
102610658 - 102684329
73672
ENSAPLT00000029766
102610658 - 102647370
36713
ENSAPLT00000039525
102610658 - 102636208
25551