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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102630278_102630647_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102630278 - 102630647
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATATCCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTTCCTAAAAG
Flanking Amino Acid:
ELGDRAEPDYGIFPTVPAGN
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.1
32.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
79.3
0.66
0.9
70.2
40.5
Minor 5ss
35.6
-1.6
3.1
50.4
45.6
Minor BPS
68.4
0.44
1.8
76.73
40.6

Associated Gene:

Gene:
CHODL
Ensembl Gene ID:
ENSAPLG00000007788
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029766
102610658 - 102647370
36713
ENSAPLT00000039525
102610658 - 102636208
25551
ENSAPLT00000025771
102610658 - 102650484
39827
ENSAPLT00000032865
102610658 - 102641514
30857
ENSAPLT00000008085
102610658 - 102635899
25242
ENSAPLT00000032720
102610658 - 102637907
27250
ENSAPLT00000031800
102610658 - 102684329
73672