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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102633726_102635829_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102633726 - 102635829
Intron Length:
2104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
CATTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTTCTGAATG
Flanking Amino Acid:
GTCCFQMLHKRLLQHGDLSS
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.6
0.73
0.7
81
30.5
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
67
0.4
1.4
70.32
37

Associated Gene:

Gene:
CHODL
Ensembl Gene ID:
ENSAPLG00000007788
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008085
102610658 - 102635899
25242