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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102633726_102637828_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102633726 - 102637828
Intron Length:
4103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATATTTTTATTT
Flanking Amino Acid:
GTCCFQMLHKSKGRTKTSPN
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
60.2
0.4
1.5
74.31
37.1

Associated Gene:

Gene:
CHODL
Ensembl Gene ID:
ENSAPLG00000007788
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032671
102610658 - 102684329
73672
ENSAPLT00000031800
102610658 - 102684329
73672
ENSAPLT00000029766
102610658 - 102647370
36713
ENSAPLT00000025771
102610658 - 102650484
39827
ENSAPLT00000032865
102610658 - 102641514
30857