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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102637908_102641457_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102637908 - 102641457
Intron Length:
3550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAATGA
5'SS Class:
major
3'SS Sequence:
AAATCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CCCTTCTAAATC
Flanking Amino Acid:
KTPRKDSSMETAAGGVRQGT
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1
63.7
37.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
73.9
0.54
0.9
66.7
39.4
Minor 5ss
42.7
-0.8
3
56.4
47.7
Minor BPS
51.6
0.03
1.7
56.43
43.4

Associated Gene:

Gene:
CHODL
Ensembl Gene ID:
ENSAPLG00000007788
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032865
102610658 - 102641514
30857