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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102637908_102684108_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102637908 - 102684108
Intron Length:
46201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAATGA
5'SS Class:
major
3'SS Sequence:
CATCTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ACATTCTTACCA
Flanking Amino Acid:
KTPRKDSSMEIHLNHPGSPR
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1
63.7
37.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
86.3
0.82
0.7
84.2
30.3
Minor 5ss
42.7
-0.8
3
56.4
47.7
Minor BPS
60.3
0.32
1.6
65.86
40.7

Associated Gene:

Gene:
CHODL
Ensembl Gene ID:
ENSAPLG00000007788
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031800
102610658 - 102684329
73672
ENSAPLT00000032671
102610658 - 102684329
73672