Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102644497_102646215_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

102644497 - 102646215

Intron Length:

1719

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGATA

5'SS Class:

strong_major

3'SS Sequence:

TTGCATATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TCACGTTTAACT

Flanking Amino Acid:

YDTGGIDSCQGDSGGPLMFE

Intron Amino Acid Position:

892

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.7

1.01

0.8

87.8

27.9

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

76.6

0.6

0.9

70.2

39.7

Minor 5ss

35.8

-1.6

3.3

48.1

47.6

Minor BPS

59.2

0.37

1.8

73.91

Associated Gene:

Gene:

TMPRSS15

Ensembl Gene ID:

ENSAPLG00000007563

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007888

102644326 - 102698651

54326