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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102646356_102647298_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102646356 - 102647298
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GTATGTTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTGAAAC
Flanking Amino Acid:
IAGWGDTTSGGSSSNILQEA
Intron Amino Acid Position:
845

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.7
83.1
30.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
69.2
0.43
1
67.2
43.5
Minor 5ss
30.4
-2.2
2.9
40.4
45.7
Minor BPS
54
0.11
1.7
68.34
36.3

Associated Gene:

Gene:
TMPRSS15
Ensembl Gene ID:
ENSAPLG00000007563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007888
102644326 - 102698651
54326