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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102649964_102650407_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102649964 - 102650407
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTGTTGTTATTT
Flanking Amino Acid:
QVIHLQCNIKPCGQRLVTQN
Intron Amino Acid Position:
722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.2
80.7
33.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
77.1
0.61
0.9
74.7
40
Minor 5ss
37.4
-1.4
2.6
43.1
36.9
Minor BPS
49.9
0.07
2.2
74.68
43.1

Associated Gene:

Gene:
TMPRSS15
Ensembl Gene ID:
ENSAPLG00000007563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007888
102644326 - 102698651
54326