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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102650458_102658409_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102650458 - 102658409
Intron Length:
7952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTGATTTAATT
Flanking Amino Acid:
SDSVCQQLGLGEHCLNNQVI
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.5
0.64
0.8
70.8
39.2
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
62.3
0.46
1.6
77.31
39.6

Associated Gene:

Gene:
TMPRSS15
Ensembl Gene ID:
ENSAPLG00000007563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007888
102644326 - 102698651
54326