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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102658543_102661135_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102658543 - 102661135
Intron Length:
2593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTGGTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CCTGCCTAAAAT
Flanking Amino Acid:
CEDGSDEAKCMRLLNGSLST
Intron Amino Acid Position:
661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
83.1
0.75
0.9
76.6
37.7
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
51.5
0.12
1.9
68.4
48.2

Associated Gene:

Gene:
TMPRSS15
Ensembl Gene ID:
ENSAPLG00000007563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007888
102644326 - 102698651
54326