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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102661244_102663078_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
102661244 - 102663078
Intron Length:
1835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTACAATCT
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTTCAGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCCTTCAGG
Flanking Amino Acid:
NFTTGYHLGQSCTLEEYQCR
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.6
0.04
1.2
52.5
39.4
Major BPS
100
1.24
0.5
100
0
Major PPT
59
0.2
1.7
70.5
34.8
Minor 5ss
40.9
-1
3.4
57.3
46.9
Minor BPS
63.5
0.28
2.1
75
43.3

Associated Gene:

Gene:
TMPRSS15
Ensembl Gene ID:
ENSAPLG00000007563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007888
102644326 - 102698651
54326