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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102670683_102671447_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102670683 - 102671447
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTAA
5'SS Class:
major
3'SS Sequence:
AAATGAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
VTLNETSDFKVIIDAIKKNG
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
74
32.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
63
0.29
1.1
56.8
46.7
Minor 5ss
42
-0.9
2.5
49.8
46.5
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
TMPRSS15
Ensembl Gene ID:
ENSAPLG00000007563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007888
102644326 - 102698651
54326