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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102671599_102672075_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
102671599 - 102672075
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATTGTTT
5'SS Class:
weak_major
3'SS Sequence:
CTTGCCCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
AATATAGTAATA
Flanking Amino Acid:
VSSDPSCLSFWYYMYSPNVY
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.1
66.7
38.9
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
72.2
0.5
0.8
62.9
34.5
Minor 5ss
49
-0.1
3.1
70
42.8
Minor BPS
44.3
-0.4
2.1
56.52
36.4

Associated Gene:

Gene:
TMPRSS15
Ensembl Gene ID:
ENSAPLG00000007563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007888
102644326 - 102698651
54326