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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102677518_102679087_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102677518 - 102679087
Intron Length:
1570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGCTAT
5'SS Class:
major
3'SS Sequence:
CCTGTTATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTCTTCTGATTT
Flanking Amino Acid:
NPNIVCRWIILVPQGLSIKL
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
68.3
39.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
71.6
0.49
0.8
69.7
35.3
Minor 5ss
48.4
-0.1
2.9
74.4
41.8
Minor BPS
57.1
0.3
1.7
75.98
41.3

Associated Gene:

Gene:
TMPRSS15
Ensembl Gene ID:
ENSAPLG00000007563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007888
102644326 - 102698651
54326