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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102679197_102684093_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102679197 - 102684093
Intron Length:
4897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TATATCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATTATAT
Flanking Amino Acid:
DGSDESEKRCAAVCDGKYML
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.2
37.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
83.2
0.75
0.9
76.7
37
Minor 5ss
37.2
-1.4
3
46.5
42.8
Minor BPS
56.7
0.29
2
78.55
43.3

Associated Gene:

Gene:
TMPRSS15
Ensembl Gene ID:
ENSAPLG00000007563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007888
102644326 - 102698651
54326