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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102684214_102690762_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102684214 - 102690762
Intron Length:
6549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTTACTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTCCTTACTA
Flanking Amino Acid:
QITGNITLESVECLPLAEVC
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
80.9
0.7
0.9
77.7
35.1
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
71.8
0.68
1.6
78.89
38.3

Associated Gene:

Gene:
TMPRSS15
Ensembl Gene ID:
ENSAPLG00000007563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007888
102644326 - 102698651
54326