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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102692280_102695809_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102692280 - 102695809
Intron Length:
3530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTACA
5'SS Class:
major
3'SS Sequence:
TTTATATTGCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TCTTGCTTAACT
Flanking Amino Acid:
EFERCEIFQFNVVVIFHLYL
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
74.4
36
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
72.1
0.5
1
66.8
44
Minor 5ss
36.3
-1.5
3
43.1
38
Minor BPS
77.9
0.95
1.7
91.67
38.1

Associated Gene:

Gene:
TMPRSS15
Ensembl Gene ID:
ENSAPLG00000007563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007888
102644326 - 102698651
54326